1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtatcttcatttccgttattctatttttttttctcgtctaatacagatgctaattctgaatgaattcatttgaactttgttctgcgcgttagGCTGGCGAGGATGCAACTAAGTTCATCAGTGAATCAGAGGAAACCAAGAAATCGATAGGGGAGAAAGAGGTTGAAGTTCGGGAAACTCTGAATCTCTTGA
species | Glycine max |
transcript | GLYMA20G37700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGT GCTGGCGAGGATGCAACTAAGTTCATCAGTGAATCAGAGGAAACCAAGAAAEST: gi|208074175|gb|GD870374.1|GD870374
genomic: TCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGTgtgagtatct ... tgcgcgttagGCTGGCGAGGATGCAACTAAGTTCATCAGTGAATCAGAGGAAACCAAGAAA
EST: TCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGT GCTGGCGAGGATGCAACT
genomic: TCCGCAAAGAATTTAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGTgtgagtatct ... tgcgcgttagGCTGGCGAGGATGCAACT
ctaatacagatgctaattctgaatgaattcatttgaactttgttctgcgcgttagGCTGGCGAGGATGCAACTAAGTTCATCAGTGAATCAGAGGAAACCAAGAAATCGATAGGGGAGAAAGAGGTTGAAGTTCGGGAAACTCTGAATCTCTTGA
tgctaat putative branch site (score: 2)
ctttgttct putative PPT
aattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcttcatttccgttattctatttttttttctcgtctaatacagatgctaattctgaatgaattcatttgaactttgttctgcgcgttagGCTGGCGAGGATGCAACTAAGTTCATCAGTGAATCAGAGGAAACCAAGAAATCGATAGGGGAGAAAGAGGTTGAAGTTCGGGAAACTCTGAATCTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG