1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagctgcttttcttactagattctactatcctagtgcatgacatttatgaagaatggtccaagtgttgtgttcctttttcattctattttttggatttcaaggctcccctttaacttttatggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGAATCTGTTACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCA
species | Glycine max |
transcript | GLYMA20G28900.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG--A-G--C--- A---TTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|151393248|gb|EV263123.1|EV263123
genomic: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGTgtaagctgct ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG--A-G--C--- A---TTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|254323667|gb|GR840308.1|GR840308
genomic: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGTgtaagctgct ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGT AGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|192296416|gb|FG991610.1|FG991610
genomic: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGTgtaagctgct ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG--A-G--C--- A---TTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|254323666|gb|GR840307.1|GR840307
genomic: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGTgtaagctgct ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGT AGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
genomic: TTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGGTAAGTTCTGTgtaagctgct ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
ttttcattctattttttggatttcaaggctcccctttaacttttatggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGAATCTGTTACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCA
ctttaac putative branch site (score: 3)
cttttat CT-rich tract
tattttttggattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgcttttcttactagattctactatcctagtgcatgacatttatgaagaatggtccaagtgttgtgttcctttttcattctattttttggatttcaaggctcccctttaacttttatggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGAATCTGTTACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT