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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacctcttccaatgttcttgatcttgattttttacatcattcaggggccaaatttctgagtatggtattgtttttaattctttctggcagATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCATGCATGATAATTTTGT

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 2
---gtatacctcttccaatgttcttgatcttgattttttacatcattcaggggccaaatttctgagtatggtattgtttttaattctttctggcagATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCATGCATGATAATTTTGT
   | |    || ||   |||| |   |  || |||||| |  || |  |      |  |||| |   || ||   |||   ||| |   ||||||||||| ||  |||||| ||  ||| ||||  |  || ||| |||||||||||||||||||  ||||||||||||||||
gtaggaattttcctcttttgttttgttttgtgtttttttcccccacttggtcattca--ttctcaacttgttaagatttc--attttccttggcagATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598584|gb|DB964234.1|DB964234
EST:     AGTGTTGTACTCCCAGAGAAATTACAAACAGGAAAGTGGAACGTTTACAG                         ATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGA
genomic: AGTGTTGTACTCCCAGAGAAATTACAAACAGGAAAGTGGAACGTTTACAGgtatacctct ... tttctggcagATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattcaggggccaaatttctgagtatggtattgtttttaattctttctggcagATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCATGCATGATAATTTTGT
                                    ttttaat  putative branch site (score: 3)
                                   tttttaattctttct  CT-rich tract
                              tattgtttttaattct  TA-rich tract