1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtgtttctcttactacagcttccccttgattcgctctcttttactctctctttgtttttattttcttttttggttttcttgttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTCGCCAATGCTTATGAG
species | Glycine max |
transcript | GLYMA20G27880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTA TCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTEST: gi|298192705|gb|HO033139.1|HO033139
genomic: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTAgtatgtgttt ... ttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
EST: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTA TCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTEST: gi|208057284|gb|GD849867.1|GD849867
genomic: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTAgtatgtgttt ... ttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
EST: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTA TCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTEST: gi|298173187|gb|HO020171.1|HO020171
genomic: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTAgtatgtgttt ... ttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
EST: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTA TCACCCAGATAAAGACCCTGATCCGGAATCGCGAAAGCTGTTCGTAAAAGTEST: gi|151409348|gb|EV279156.1|EV279156
genomic: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTAgtatgtgttt ... ttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
EST: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTA TCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTEST: gi|192331933|gb|FK026717.1|FK026717
genomic: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTAgtatgtgttt ... ttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
EST: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTA TCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
genomic: GCCAATGCTTCCGAAATTAAAAAAGCTTACTACAAGCTCTCCTTGAAGTAgtatgtgttt ... ttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGT
tcttttactctctctttgtttttattttcttttttggttttcttgttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTCGCCAATGCTTATGAG
ctctctctttgttttt CT-rich tract
tttgtttttattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtttctcttactacagcttccccttgattcgctctcttttactctctctttgtttttattttcttttttggttttcttgttcaattcagTCACCCAGATAAAAACCCTGATCCGGAATCGCGAAAGCTGTTTGTAAAAGTCGCCAATGCTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT