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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattctgtctgcaacttctaatgtggtttaataatttcatttaaacaatttaactttcagaatgtgctttactttcaatatttgtttcatatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCATCAACATTGATACAGTTATTGATTGGCTTGTAAAACAT

Basic information

species Glycine max
transcript GLYMA20G27070.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G27070.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G67560.1 (Arabidopsis thaliana), 3'ss of exon 5
tttattctgtctgcaacttctaatgtggtttaataatttcatttaaacaatttaactttcagaatgtgctttactttcaatatttgtttcatatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCATCAACATTGATACAGTTATTGATTGGCTTGTAAAACAT
     |  | ||  ||| |  ||   |       | ||    ||    | ||| | | | | |||||  |||| |||| ||   |||||   |    |||||| || || |   | |  | |||||| || |||||||||||||| || || || ||||| | |||||| |||  ||| ||||||||||||||||| || 
----gtaagcctaaaacctaaaacacgacaatggacttggcattttttactttgattctaataatgt--tttattttccat---tgtttgcca----cagGGGTCTCAAGTCACTGACAGATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCTACCAACATCGATCAAGTCATTGATTGGCTTGTAAAGCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467099|gb|CD409127.1|CD409127
EST:     AAGATTGACAAACCTGGGGCATTGTCTAAGCAAGACCTGACAGAGCAGAT                         GGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTG
genomic: AAGATTGACAAACCTGGGGCATTGTCTAAGCAAGACCTGACAGAGCAGATgtaagtatca ... atatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatttaactttcagaatgtgctttactttcaatatttgtttcatatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCATCAACATTGATACAGTTATTGATTGGCTTGTAAAACAT
    atttaac  putative branch site (score: 3)
                        tttactttcaatattt  TA-rich tract