1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttttctgggctgatgtagcggattcttgttcaatcccatgccttgaagtggcataatatataaccctcttaggcttgcctatgcttgttgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGGAAGCTGGTG
species | Glycine max |
transcript | GLYMA20G27030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAG CATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGEST: gi|18734241|gb|BM528070.1|BM528070
genomic: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAGgtcataccaa ... tgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
EST: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAG CATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGEST: gi|192299355|gb|FG990751.1|FG990751
genomic: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAGgtcataccaa ... tgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
EST: CGCTCTTATCACCAG CATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGEST: gi|4291324|gb|AI441745.1|AI441745
genomic: CGCTCTTATCACCAGgtcataccaa ... tgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
EST: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAG CATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGEST: gi|298197509|gb|HO044988.1|HO044988
genomic: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAGgtcataccaa ... tgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
EST: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAG CATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGEST: gi|298189778|gb|HO038181.1|HO038181
genomic: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAGgtcataccaa ... tgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
EST: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAG CATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
genomic: AGCAGCCCAAACATTCGTCTCAACCACCGAGATCTCGCTCTTATCACCAGgtcataccaa ... tgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGG
tgaagtggcataatatataaccctcttaggcttgcctatgcttgttgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGGAAGCTGGTG
atataac putative branch site (score: 3)
ataatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttctgggctgatgtagcggattcttgttcaatcccatgccttgaagtggcataatatataaccctcttaggcttgcctatgcttgttgtataacagCATGATGAACGGGGTAGTACTGGGCAGGTTGGTCGAAGCAATGGTCAAAGGGAAGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -tttctgg
- - - - - gctgatg
- - - - - - - - - - - - - - - - caatccc
- - - - - - - - - - - - - - - - - - - - - ccttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt