1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtttgcttctcgcacgtcttctttatgagccaacggcttgttttttatttgatgctagtaattgtaattatttttttcttctttttgttctaatgatcagTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAG
species | Glycine max |
transcript | GLYMA20G25640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCT TTATTATGCGGT-CTGTTGCCAAATGGC-GTTTTCCTTCTCTTCTATATGCEST: gi|26057505|gb|CA800419.1|CA800419
genomic: ACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCTgtaagtgttg ... taatgatcagTTAT-ATGCGGTTCTGTTGCCAA-TGGCCGTTTTCCTTCTCTTCTATATGC
EST: ACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCT TTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCEST: gi|151400943|gb|EV270757.1|EV270757
genomic: ACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCTgtaagtgttg ... taatgatcagTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGC
EST: ACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCT TTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGC
genomic: ACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCTgtaagtgttg ... taatgatcagTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGC
tatttgatgctagtaattgtaattatttttttcttctttttgttctaatgatcagTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAG
ttctaat putative branch site (score: 2)
taattatttttttctt CT-rich tract
taattgtaattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcttctcgcacgtcttctttatgagccaacggcttgttttttatttgatgctagtaattgtaattatttttttcttctttttgttctaatgatcagTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - ctcgcac
- - - - - - - - - - - - - - gccaacg
- - - - - - - - - - - - - - - - - -gcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - -tgatgct