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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgtctttgcatgcacttgagtttgtgttacactcggaatttttaatgttttttgtttcattttgtatgctgtaacggtaactgaaatacatgaagtctatataatactgagggtccattttattgtcgtttagttctttcgttgacggttgatatggttgttgccgttgatttatgggcagGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGCCCAACATTACTACAGTACATTGTCTCGTTAAAG

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595095|gb|DB972029.1|DB972029
EST:     CCGGTGCTACTGATGGATGCAGCCGAACGGTCGGAAATTTTCTTTACACG                         GTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGCCCAACATTACTA
genomic: CCGGTGCTACTGATGGATGCAGCCGAACGGTCGGAAATTTTCTTTACACGgtaacatgtc ... ttatgggcagGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGCCCAACATTACTA
EST: gi|209726982|gb|BW680301.1|BW680301
EST:     CCGGTGCTACTGATGGATGCAGCCGAACGGTCGGAAATTTTCTTTACACG                         GTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGCCCAACATTACTA
genomic: CCGGTGCTACTGATGGATGCAGCCGAACGGTCGGAAATTTTCTTTACACGgtaacatgtc ... ttatgggcagGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGCCCAACATTACTA
EST: gi|208228721|gb|GE023287.1|GE023287
EST:     CCGGTGCTACTGATGGATGCAGCCGAACGGTCGGAAATTTTCTTTACACG                         GTTGCGACGAACGTACCCTCGCAA-TGCCTTGCCGCATCGCCCAACATTAC
genomic: CCGGTGCTACTGATGGATGCAGCCGAACGGTCGGAAATTTTCTTTACACGgtaacatgtc ... ttatgggcagGTTGCGACGAA-GTACCCT-GCAAATGCCTTGCCGCATCGCCCAACATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttagttctttcgttgacggttgatatggttgttgccgttgatttatgggcagGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGCCCAACATTACTACAGTACATTGTCTCGTTAAAG
                                        ttgatttat  TA-rich tract