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...acaagttacaatgcctagattgatcatgggcatatattttgtgctgctaaaactttattagatctcattccctgttaattacaagctaccttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGGAGGAAGTGGCCATTTTGCTCAGACTGTCAAAGCTATGAAG
species | Glycine max |
transcript | GLYMA20G24430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGG CGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGGEST: gi|192312745|gb|FK003971.1|FK003971
genomic: TGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGGgtgagtgagt ... ttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGG
EST: GCTGATCCTATGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGG CGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGGEST: gi|207780441|gb|GD751676.1|GD751676
genomic: GCTGATCCTATGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGGgtgagtgagt ... ttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGG
EST: GCTGATCCTATGGAACCGGAAAATACTGCCAAGGCAATCGCAAGTTGGGG CGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGGEST: gi|192312746|gb|FK003972.1|FK003972
genomic: GCTGATCCTATGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGGgtgagtgagt ... ttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGG
EST: GCTGATCCTATGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGG CGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGG
genomic: GCTGATCCTATGGAACCGGAAAATACTGCCAAGGCAATTGCAAGTTGGGGgtgagtgagt ... ttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGG
gctaaaactttattagatctcattccctgttaattacaagctaccttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGGAGGAAGTGGCCATTTTGCTCAGACTGTCAAAGCTATGAAG
ctacctttttt CT-rich tract
aactttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagttacaatgcctagattgatcatgggcatatattttgtgctgctaaaactttattagatctcattccctgttaattacaagctaccttttttgcagCGTGGATTATATTGTCTTAACAAGTGTGGATCGTGATGATCTGCCTGATGGAGGAAGTGGCCATTTTGCTCAGACTGTCAAAGCTATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - caatgcc
- - - - - - - - - - - - - - -gcatata
- - - - - - - - - - - - - - - - - - - - gtgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaagc