1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tgattatttgatcagagcagtgcctttttagtatcgcttctcgtttgtgttggcataaattgacttttgttcaactcttcttttgtgtgcttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGG
species | Glycine max |
transcript | GLYMA20G24070.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTG TTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTEST: gi|209701922|gb|BW664576.1|BW664576
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGgtgcgttttt ... ttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTT
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGC-- -T----GATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTEST: gi|209698692|gb|BW656517.1|BW656517
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGgtgcgttttt ... ttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTT
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTG TTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTEST: gi|151411391|gb|EV281202.1|EV281202
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGgtgcgttttt ... ttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTT
EST: AGATCGTAAACGTCTCGCTG TTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTEST: gi|209713872|gb|BW684065.1|BW684065
genomic: AGATCGTAAACGTCTCGCTGgtgcgttttt ... ttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTT
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTG TTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTT
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGgtgcgttttt ... ttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTT
tgtgttggcataaattgacttttgttcaactcttcttttgtgtgcttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGG
aattgac putative branch site (score: 3)
cttgttt putative PPT
ataaattgactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattatttgatcagagcagtgcctttttagtatcgcttctcgtttgtgttggcataaattgacttttgttcaactcttcttttgtgtgcttgtttgaagTTCCAAGATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - -gcttctc
- - - - - - - - - - - - - - - - - - - - - - - gtgttgg