1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttgatcagagcagtgcctttttagtatcgcttctcgtttgtgttggcataaattgacttttgttcaactcttcttttgtgtgcttgtttgaagttccaagATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGG
species | Glycine max |
transcript | GLYMA20G24070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTG ATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTEST: gi|209713872|gb|BW684065.1|BW684065
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGgtgcgttttt ... aagttccaagATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATT
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGTTCCAAGEST: gi|209698692|gb|BW656517.1|BW656517
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGC---T----Ggtgcgttttt ... aagt
EST: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGCTGTTCCAAG
genomic: TGTTCTTCACCCACGTCTCTCTCCCGCTTCAGATCGTAAACGTCTCGC---T----Ggtgcgttttt ... aagt
gcataaattgacttttgttcaactcttcttttgtgtgcttgtttgaagttccaagATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGG
aattgac putative branch site (score: 3)
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatcagagcagtgcctttttagtatcgcttctcgtttgtgttggcataaattgacttttgttcaactcttcttttgtgtgcttgtttgaagttccaagATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - -tgccttt
- - - - - - - - - - - - - - gcttctc
- - - - - - - - - - - - - - - - - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt