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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtttacccaattgtgctctttagcatatctttttatgcaagccatgttcactttattaaggcatattttgttttttgtatcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACTGTCCTTCTTGCCGCCCTTGATTTTTGGG

Basic information

species Glycine max
transcript GLYMA20G22720.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134284|gb|AW132677.1|AW132677
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgttttgttta ... atcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|16995640|gb|BM085012.1|BM085012
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgttttgttta ... atcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|213608370|gb|DB963104.1|DB963104
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCCGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgttttgttta ... atcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|298181305|gb|HO022744.1|HO022744
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgttttgttta ... atcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|23057344|gb|BU578018.1|BU578018
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgttttgttta ... atcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcaagccatgttcactttattaaggcatattttgttttttgtatcctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACTGTCCTTCTTGCCGCCCTTGATTTTTGGG
                                ttttgttttttgtatc  CT-rich tract
                             atattttgttttttgt  TA-rich tract