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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatttgtaaacccgctcttttaaatttttcattttttccatgttagttttattttctctgtgtctgtgtggttggttataaatttcaggctcagttacttacagttttcttcattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG

Basic information

species Glycine max
transcript GLYMA20G22600.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtaatttgtaaacccgctcttttaaatttttcattttttccatgttagttttattttctctgtgtctgtgtggttggttataaatttcaggctcagttacttacagtt-ttcttcattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG
|||||| |         |   |  ||    || ||| | ||     ||||  || | ||||  |||    |   || ||  | || | || ||   |  |||||| |      ||||| |||||  |||| |||||||| ||||||||||| || || ||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || ||||||
gtatgtgagggactggtctaatgcttctgtttcttcgtgttac---tgttccttgtcttttgcctgcacttaattgattattgatcatttgca---ttggttactgaagacagttcttgatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213589828|gb|DB969621.1|DB969621
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|26058927|gb|CA801841.1|CA801841
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|209720625|gb|BW654452.1|BW654452
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|193375822|gb|FK343069.1|FK343069
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAAGACAGGACATAT
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGA-GACAGGACATAT
EST: gi|193633458|gb|FK584654.1|FK584654
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAAC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAAC
EST: gi|209699787|gb|BW655800.1|BW655800
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|18039891|gb|BM308185.1|BM308185
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|192296530|gb|FG991636.1|FG991636
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|22522553|gb|BU081364.1|BU081364
EST:     ATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: ATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|213616715|gb|DB971240.1|DB971240
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|208056113|gb|GD850740.1|GD850740
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|15814184|gb|BI786459.1|BI786459
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGTTGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|254333709|gb|GR848627.1|GR848627
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|254327042|gb|GR836651.1|GR836651
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATC
EST: gi|193335410|gb|FK299368.1|FK299368
EST:     CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGAACAGGACATAT
genomic: CGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGA-CAGGACATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggttggttataaatttcaggctcagttacttacagttttcttcattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG
                             tacttac  putative branch site (score: 1)
                                      ttttcttcattttgt  putative PPT
     ttggttataaattt  TA-rich tract