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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG

Basic information

species Glycine max
transcript GLYMA20G21250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295086|gb|FG986805.1|FG986805
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|58022880|gb|CX709621.1|CX709621
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|10234556|gb|BE803444.1|BE803444
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|207759847|gb|GD732288.1|GD732288
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGCTGGCCAA
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGCTGGCCAA
EST: gi|12689942|gb|BG156278.1|BG156278
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|58020838|gb|CX707580.1|CX707580
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|14990237|gb|BI315910.1|BI315910
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|7588010|gb|AW703815.1|AW703815
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|151400274|gb|EV270088.1|EV270088
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATAGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|17964468|gb|BM271203.1|BM271203
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|5677258|gb|AI938388.1|AI938388
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31464033|gb|CD406061.1|CD406061
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192308445|gb|FK002817.1|FK002817
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31312516|gb|CD397719.1|CD397719
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|21600407|gb|BQ610738.1|BQ610738
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|254325850|gb|GR838731.1|GR838731
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192327100|gb|FK015492.1|FK015492
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|207830383|gb|GD802397.1|GD802397
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|18692955|gb|BM521803.1|BM521803
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|254324568|gb|GR833993.1|GR833993
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31469700|gb|CD411728.1|CD411728
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|208150579|gb|GD945108.1|GD945108
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAA
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192310362|gb|FK002242.1|FK002242
EST:     GACTGGGAAGTCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCCACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192323685|gb|FK015991.1|FK015991
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31473931|gb|CD415959.1|CD415959
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|151399653|gb|EV269524.1|EV269524
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|18848468|gb|BM567685.1|BM567685
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192324854|gb|FK016070.1|FK016070
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
                                       ttattttatttttc  CT-rich tract
         atgatttttttttatc  TA-rich tract