1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgcttacaatctcagggactagaacaggatttttttatttattttttaattattctagtgcttttgtttaggttatttatgtggtgtttttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGATTGAAGCCGATTGCGGATGAGCTTGGTGTGCCATTGTCTCAGCTTGCGA
species | Glycine max |
transcript | GLYMA20G19000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|192316315|gb|FK011674.1|FK011674
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|51341740|gb|CO983057.1|CO983057
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|16344418|gb|BI970013.1|BI970013
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|7924550|gb|AW830576.1|AW830576
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTANGAAGGTTGATGGAEST: gi|23731385|gb|BU763810.1|BU763810
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|9819631|gb|BE555144.1|BE555144
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|10844260|gb|BF067570.1|BF067570
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAAGAAGGTTGATGGAEST: gi|6727056|gb|AW311410.1|AW311410
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|26048175|gb|CA784741.1|CA784741
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGAEST: gi|209726692|gb|BW654821.1|BW654821
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
tttaattattctagtgcttttgtttaggttatttatgtggtgtttttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGATTGAAGCCGATTGCGGATGAGCTTGGTGTGCCATTGTCTCAGCTTGCGA
ttttaat putative branch site (score: 3)
tgtttttttct putative PPT
tttaggttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttacaatctcagggactagaacaggatttttttatttattttttaattattctagtgcttttgtttaggttatttatgtggtgtttttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGATTGAAGCCGATTGCGGATGAGCTTGGTGTGCCATTGTCTCAGCTTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
-tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg