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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttgttttgggctatctttctttctgttttccatttcttagagaaccagtggctattctttctgtggttattaaattagtaaattgtttttgttttgtaaaaccaaagtacactttgtaatttgataagttcaattcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACAC

Basic information

species Glycine max
transcript GLYMA20G18440.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294286|gb|FG986375.1|FG986375
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|192326367|gb|FK017669.1|FK017669
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|19054300|gb|BM732967.1|BM732967
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|193689798|gb|FK632317.1|FK632317
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|7588075|gb|AW703878.1|AW703878
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|192305354|gb|FG994036.1|FG994036
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|23728179|gb|BU762135.1|BU762135
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|298192581|gb|HO033015.1|HO033015
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
EST: gi|151394202|gb|EV264073.1|EV264073
EST:     GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT                         TCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG
genomic: GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttgtaaaaccaaagtacactttgtaatttgataagttcaattcttgcagTCTCTACTATCTATCTGTTCCTTTTGTACTCTGAGTGGGTAGAAGTCATGGTAAGGCTCACTGCTGACTTGATTTGGAAAAGCCCTCATTTCTTCAACAC
                               atttgat  putative branch site (score: 5)
                                              ttcttgc  putative PPT
                         tttgtaatttgataa  TA-rich tract