1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggctgacatgaactcaacaatgcttctgtgttatgcttcagttatgatttctgtttgtcttgtagttagaaacttcactatgttcaatgcttgtttcagGCTCGGAAAAGGAAATTGGGCTTGCTAGAGGATGAAGATAACTCCAAATTGAGTGACATGGATATTTTAAAAGAGAGTAATGATTTTGCTACTGTTGGGA
species | Glycine max |
transcript | GLYMA20G17960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAAGGCTATTGAGGAATTGGAGCAAAAGAAAGCGGAACGCAAGGAGAGG GCTCGGAAAAGGAAATTGGGCTTGCTAGAGGATGA
genomic: CGAAGGCTATTGAGGAATTGGAGCAAAAGAAAGCGGAACGCAAGGAGAGGgtaattgttg ... cttgtttcagGCTCGGAAAAGGAAATTGGGCTTGCTAGAGGATGA
tgatttctgtttgtcttgtagttagaaacttcactatgttcaatgcttgtttcagGCTCGGAAAAGGAAATTGGGCTTGCTAGAGGATGAAGATAACTCCAAATTGAGTGACATGGATATTTTAAAAGAGAGTAATGATTTTGCTACTGTTGGGA
cttgtttc CT-rich tract
ttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctgacatgaactcaacaatgcttctgtgttatgcttcagttatgatttctgtttgtcttgtagttagaaacttcactatgttcaatgcttgtttcagGCTCGGAAAAGGAAATTGGGCTTGCTAGAGGATGAAGATAACTCCAAATTGAGTGACATGGATATTTTAAAAGAGAGTAATGATTTTGCTACTGTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
aggctga
- - - - - - -ctcaaca
- - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttcac