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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttctttattctggttttcttggatgttatgctctccagtaacaaaacctaagaggcagtgcattttctgattgatgcagATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAA

Basic information

species Glycine max
transcript GLYMA20G08020.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G08020.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 2
gtaaattt-----ctttattctggttttcttgga----tgttatgctctccagtaaca-aaacctaagaggcagtgcattttctgattgatgcagATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAA
|| | |||      ||| || ||     |   ||    | || | || | |  | ||| |||| ||| || ||  |    |  | |    |||||||| ||| | |||||||| |||||||||||||||||||||||||| || || ||| |  |||||  ||| ||||||||||  ||||||||||| || |||
gtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatgctctccagtaacaaaacctaagaggcagtgcattttctgattgatgcagATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAA
              taacaaaa  TA-rich tract