Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattgccaatttccatgtacttacccaagcaagttgaagtcactgtctttttttatctggtgctactgtgttgtgagattgtgatactttttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACTGCGGATAGGAAAGCTGGGCAGCCAATCTCTTCTGTGTTCCCACATTTGA

Basic information

species Glycine max
transcript GLYMA20G01220.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715258|gb|BW654145.1|BW654145
EST:     ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAG                         GTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
genomic: ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGgtaagttaca ... tttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
EST: gi|193660600|gb|FK601648.1|FK601648
EST:     ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAG                         GTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTAGACACTGATGA
genomic: ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGgtaagttaca ... tttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATT-G-CACTGATGA
EST: gi|213618222|gb|DB972992.1|DB972992
EST:     ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAG                         GTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
genomic: ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGgtaagttaca ... tttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
EST: gi|193535648|gb|FK492626.1|FK492626
EST:     ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAG                         GTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGA
genomic: ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGgtaagttaca ... tttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGA
EST: gi|298166466|gb|HO009905.1|HO009905
EST:     ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAG                         GCTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
genomic: ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGgtaagttaca ... tttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
EST: gi|192326752|gb|FK017349.1|FK017349
EST:     ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAG                         GTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT
genomic: ATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGgtaagttaca ... tttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttttttatctggtgctactgtgttgtgagattgtgatactttttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACTGCGGATAGGAAAGCTGGGCAGCCAATCTCTTCTGTGTTCCCACATTTGA
                                        tacttttt  CT-rich tract
     tttttatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcattgccaatttccatgtacttacccaagcaagttgaagtcactgtctttttttatctggtgctactgtgttgtgagattgtgatactttttgggttagGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACTGCGGATAGGAAAGCTGGGCAGCCAATCTCTTCTGTGTTCCCACATTTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
-cattgcc
- - - - - - - catgtac
- - - - - - - - - - - - cccaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg