Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtcccactctcctcttcactttatatcacttgatcatgattacattttaggctttaatgctgattttttttcatgaatcttgtttgttacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGTCTTGACATCTTTGACCTACGT

Basic information

species Glycine max
transcript GLYMA19G45130.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814899|gb|BQ299377.1|BQ299377
EST:     GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGAT                         TAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
genomic: GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGATgtatagtccc ... tacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
EST: gi|7042246|gb|AW472140.1|AW472140
EST:     GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGAT                         TAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
genomic: GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGATgtatagtccc ... tacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
EST: gi|213595224|gb|DB962363.1|DB962363
EST:     GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGAT                         TAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
genomic: GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGATgtatagtccc ... tacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
EST: gi|209706938|gb|BW683227.1|BW683227
EST:     GGACAATCTAGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGAT                         TAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
genomic: GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGATgtatagtccc ... tacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
EST: gi|207801336|gb|GD773448.1|GD773448
EST:     GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGAT                         TAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
genomic: GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGATgtatagtccc ... tacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
EST: gi|20814831|gb|BQ299309.1|BQ299309
EST:     GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGAT                         TAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT
genomic: GGACAATCTTGGAAAGGCATTACTTGCTCTGGCAATCGTGTTACAGAGATgtatagtccc ... tacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttaggctttaatgctgattttttttcatgaatcttgtttgttacttctcagTAAGTTATCTAATCTTGGACTAACTGGATCGTTGCCTTATGGATTACAAGTCTTGACATCTTTGACCTACGT
               tgctgat  putative branch site (score: 3)
                                            ttacttctc  putative PPT
                    attttttttcatgaat  TA-rich tract