1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtattgtgtagtgtaggcacaagctagtgcgtgaaagatgaatttacctttgagctcaagatccttatgaacttcttaatggtaatttcttacatgcagTTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATTTGACTTAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATC
species | Glycine max |
transcript | GLYMA19G44970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCGGTTACAAAG TTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGEST: gi|20813399|gb|BQ297877.1|BQ297877
genomic: TTCTACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCGGTTACAAAGgttcttttct ... ttacatgcagTTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAG
EST: TTCTACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCGGTTACAAAG TTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAG
genomic: TTCTACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCGGTTACAAAGgttcttttct ... ttacatgcagTTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAG
tacctttgagctcaagatccttatgaacttcttaatggtaatttcttacatgcagTTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATTTGACTTAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATC
ttcttac putative branch site (score: 2)
tttcttac CT-rich tract
taatttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtattgtgtagtgtaggcacaagctagtgcgtgaaagatgaatttacctttgagctcaagatccttatgaacttcttaatggtaatttcttacatgcagTTGTTGCATTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATTTGACTTAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - -tgtagtg
- - - - - - - - - cacaagc
- - - - - - - - - - - - - - tgcgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac