1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagttgggtttgttgacttccaagatccatgtacctgtcaaagtgatttgcttttgctttacaatatcttcttactgttgttcagtgttcttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTTGAATTCGAAGTGTGAAGGATTTGCTGAGTTTCCCAAAGACATGTGGTC
species | Glycine max |
transcript | GLYMA19G44420.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG ATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTEST: gi|209705624|gb|BW653077.1|BW653077
genomic: ATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAGgtaatatacg ... ttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCT
EST: ATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG ATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTEST: gi|192296878|gb|FG990239.1|FG990239
genomic: ATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAGgtaatatacg ... ttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCT
EST: AGATTCAGCAGCAACTCTGCCCGCATGCGTGCGT---G--AGGTAAG ATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCT
genomic: AGATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAGgtaatatacg ... ttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCT
atttgcttttgctttacaatatcttcttactgttgttcagtgttcttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTTGAATTCGAAGTGTGAAGGATTTGCTGAGTTTCCCAAAGACATGTGGTC
ttcttac putative branch site (score: 2)
ttcttcgtttc putative PPT
tttacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttgggtttgttgacttccaagatccatgtacctgtcaaagtgatttgcttttgctttacaatatcttcttactgttgttcagtgttcttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTTGAATTCGAAGTGTGAAGGATTTGCTGAGTTTCCCAAAGACATGTGGTC
- - -gggtttg
- - - - - - - - -ttccaag
- - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagtg