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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgattcctggattagctaagcttacaatgtcaaatatagaaaacattattggacctttttattatattgaagttaattagcttttatggattggcagAGCACACAAGAATTACAGTCCCCGGCTCAAGCATCTCGTGAATCACAGAGTGAACAACCAAAAAATCACACTACTGATGCTCCTGTTACTGATTCGGTTT

Basic information

species Glycine max
transcript GLYMA19G44420.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296878|gb|FG990239.1|FG990239
EST:     CCCAAAGACATGTGGTCAGCCTGTTTTCGGCAGAAATGAAGAACTCCCAG                         AGCACACAAGAATTACAGTCCCCGGCTCAAGCATCTCGTGAATCACAGAGT
genomic: CCCAAAGACATGTGGTCAGCCTGTTTTCGGCAGAAATGAAGAACTCCCAGgttgtctcca ... ggattggcagAGCACACAAGAATTACAGTCCCCGGCTCAAGCATCTCGTGAATCACAGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattattggacctttttattatattgaagttaattagcttttatggattggcagAGCACACAAGAATTACAGTCCCCGGCTCAAGCATCTCGTGAATCACAGAGTGAACAACCAAAAAATCACACTACTGATGCTCCTGTTACTGATTCGGTTT
                            agttaat  putative branch site (score: 4)
             tttttattatattgaa  TA-rich tract