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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttatcatgtaccttactttttgttcaatagttctcttatttatgtatttatttctattgcacaagctgcagaaacatatcctactctgttgatgcagGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGCAATTCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTC

Basic information

species Glycine max
transcript GLYMA19G43690.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401612|gb|EV269865.1|EV269865
EST:     ACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAG                         GCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
genomic: ACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAGgtttgtctct ... gttgatgcagGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
EST: gi|192306143|gb|FG996575.1|FG996575
EST:     ACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGA-CCAAAACCAAAG                         GCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
genomic: ACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAGgtttgtctct ... gttgatgcagGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
EST: gi|15337669|gb|BI498325.1|BI498325
EST:     ACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAG                         GCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
genomic: ACTGGAGTCAACTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAGgtttgtctct ... gttgatgcagGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
EST: gi|192303316|gb|FG997402.1|FG997402
EST:     GAACCAAAACCAAAG                         GCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC
genomic: GAACCAAAACCAAAGgtttgtctct ... gttgatgcagGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatttatttctattgcacaagctgcagaaacatatcctactctgttgatgcagGCATCTCATGTTCCTCAGCAGCAGCATATAGCATCTGTAGAAGTTGTTGGCAATTCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTC
                                            tgttgat  putative branch site (score: 4)
 ctctgtt  CT-rich tract
 ttatttctatt  TA-rich tract