1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacgtcacccaaaactgggcataaagggatgttaagatcccatatcagttataccttttggtgttgatgttagaccaagttcatgctcaatttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAG
species | Glycine max |
transcript | GLYMA19G43580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|298199270|gb|HO042633.1|HO042633
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|207719536|gb|GD703491.1|GD703491
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATCGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGEST: gi|208290307|gb|GE082735.1|GE082735
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAG
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTAGEST: gi|207804600|gb|GD777759.1|GD777759
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCT-G
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTEST: gi|208116462|gb|GD914521.1|GD914521
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTT
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTEST: gi|208070376|gb|GD870913.1|GD870913
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCT
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|31561308|gb|CD487146.1|CD487146
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|207776266|gb|GD749587.1|GD749587
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTEST: gi|20075691|gb|BQ094474.1|BQ094474
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCT
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|298164608|gb|HO014253.1|HO014253
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|208301413|gb|GE100268.1|GE100268
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
genomic: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
cagttataccttttggtgttgatgttagaccaagttcatgctcaatttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAG
tgttgat putative branch site (score: 4)
tttttttc putative PPT
tcaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgtcacccaaaactgggcataaagggatgttaagatcccatatcagttataccttttggtgttgatgttagaccaagttcatgctcaatttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -cccaaaa
- - - - - - - - - - - - - ggatgtt
- - - - - - - - - - - - - - - - - - - - catatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctc