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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttatcattaatttgctttaattttctctaagcacacaccacctgtttcattttaattaaacattactaatatggatatataattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAG

Basic information

species Glycine max
transcript GLYMA19G43450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334950|gb|GR844735.1|GR844735
EST:     TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGA                         AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
genomic: TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAgtaagtcttt ... aattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
EST: gi|192306533|gb|FG997217.1|FG997217
EST:     TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGTCGTACCTTGGGA                         AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
genomic: TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAgtaagtcttt ... aattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
EST: gi|254318334|gb|GR832502.1|GR832502
EST:     TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGA                         AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
genomic: TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAgtaagtcttt ... aattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
EST: gi|192306534|gb|FG997218.1|FG997218
EST:     TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGTCGTACCTTGGGA                         AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGCGGC
genomic: TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAgtaagtcttt ... aattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
EST: gi|57575143|gb|CX548118.1|CX548118
EST:     TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGA                         AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC
genomic: TGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAgtaagtcttt ... aattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccacctgtttcattttaattaaacattactaatatggatatataattccacagAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAG
                            tactaat  putative branch site (score: 1)
         tttcattttaattaaa  TA-rich tract