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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttctgcttagcaaatgaaaagctgattgcgggtttcaattttctcattggcactgcatcatgtaatagaaaaataattgcaccttttttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGATCATACTCATCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGC

Basic information

species Glycine max
transcript GLYMA19G42870.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396763|gb|EV266636.1|EV266636
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|51341748|gb|CO983065.1|CO983065
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|15664651|gb|BI702022.1|BI702022
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|151396422|gb|EV266299.1|EV266299
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|192298478|gb|FG988479.1|FG988479
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|120492292|gb|EH220459.1|EH220459
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|151412683|gb|EV282495.1|EV282495
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|192327941|gb|FK022472.1|FK022472
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|192331168|gb|FK023721.1|FK023721
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
EST: gi|151409790|gb|EV279598.1|EV279598
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTTATTCGTCGACAGCAATGA
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTT-ATTCGTCGACAGCAATGA
EST: gi|7326844|gb|AW620642.1|AW620642
EST:     GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAG                         GCTATATATCTATTTGTAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTAT
EST: gi|120492144|gb|EH220311.1|EH220311
EST:     GTTGTTGGTTTGGATA-TCTGCTCAAG                         GCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT
genomic: GTTGTTGGTTTGGATATTCTGCTCAAGgtatttcaac ... ttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcattggcactgcatcatgtaatagaaaaataattgcaccttttttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGATCATACTCATCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGC
                                  ttgcaccttttttctt  CT-rich tract
              atcatgtaatagaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttctgcttagcaaatgaaaagctgattgcgggtttcaattttctcattggcactgcatcatgtaatagaaaaataattgcaccttttttcttgttagGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGATCATACTCATCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -ttctgct
- - - - - - - - - gaaaagc
- - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacct