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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcattttttttctctttgttgcatttctcagtgatcaaatggagcgtcaatttattcccacaatggttgtgatattcataaggaattcttgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAACTTGCTAAGTAATGTTTTGAGTGCAATACCTCAAGATATTAGCAGGGATG

Basic information

species Glycine max
transcript GLYMA19G41810.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41810.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g01580.t01 (Vitis vinifera), 3'ss of exon 2
--tgcattttttttctctttgttgcatttctcagtgatcaaatggagcgtcaatttattcc-cacaatggttgtgatattcataaggaattcttgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAACTTGCTAAGTAATGTTTTGAGTGCAATACCTCAAGATATTAGCAGGGATG
  |  |||     | | | |   | |        |  |   || |    |  ||  || |  ||||   ||||  || |  | |      | |||||| | || | |||||||||||||| |||||||| |||||||| ||||| ||||| || ||  | | |||||||||||||||||| |||||||  ||| |  |||| |
tctaaattcaaaatttttctagagtaaccaattatagtgtcattgg--attgatgcatcctacacaccagttgcaat-tctaaacttgggttttgatttgtagATTTTTGATGGGCATAATGGTATATCTGCTGCTATCTTTGCAAAGGAGAATTTATTGAATAATGTTTTGAGTGCAATTCCTCAAGGCATTGGTCGGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193562110|gb|FK516919.1|FK516919
EST:     TTGCCTCAGGGTTCCCGGGGGATGCATCAACGGCGTTTTCTGTCTTTGCG                         GTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
genomic: TTGCCTCAGGGTTCCC-GGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttt ... tgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
EST: gi|6727063|gb|AW311417.1|AW311417
EST:     ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCG                         GTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
genomic: ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttt ... tgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
EST: gi|10847169|gb|BF069903.1|BF069903
EST:     ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCG                         GTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
genomic: ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttt ... tgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcaatttattcccacaatggttgtgatattcataaggaattcttgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAACTTGCTAAGTAATGTTTTGAGTGCAATACCTCAAGATATTAGCAGGGATG
                                          tcttgat  putative branch site (score: 4)
                                         ttctt  CT-rich tract
                           atattcataa  TA-rich tract