1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattcgcattactcgttttcgtgcatgttcgtttgcgtttcgttttttctatatgttcgttcttctgacggcgtccgaacgaagccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCGGAAGGCGGAGAACTTCGGAGAGTGGTATTCCGAG
species | Glycine max |
transcript | GLYMA19G40930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACTGAAGCCNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG GTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCEST: gi|7591393|gb|AW707127.1|AW707127
genomic: AACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATC
EST: CTGAATCCAAAAAACCTGCCGCTAAGCAATCCG GTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCEST: gi|209700498|gb|BW664460.1|BW664460
genomic: CTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATC
EST: AACTGAAGCCNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG GTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCEST: gi|213604934|gb|DB956323.1|DB956323
genomic: AACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATC
EST: AACTGAAGCCNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG GTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCEST: gi|208266921|gb|GE062316.1|GE062316
genomic: AACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATC
EST: GAATACCAAAAAACCTGCCGCTAAGCAATCCG GTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATC
genomic: GAAT-CCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATC
tttcgttttttctatatgttcgttcttctgacggcgtccgaacgaagccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCGGAAGGCGGAGAACTTCGGAGAGTGGTATTCCGAG
ttctgac putative branch site (score: 2)
ttttttctatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcgcattactcgttttcgtgcatgttcgtttgcgtttcgttttttctatatgttcgttcttctgacggcgtccgaacgaagccttgcagGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCGGAAGGCGGAGAACTTCGGAGAGTGGTATTCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA