Sequence
atgc intronic sequence ATGC exonic sequencegtactaacacttttattcttcaatcaatcaatacacgctttacttgcttattcacttttccactttcggttcgattaaaatttagaatttaaaccacccaaaaataattgtaaatataatttgaaccgtgtgcatatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAA
Basic information
species | Glycine max |
transcript | GLYMA19G40560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G40560.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------gtactaacacttttatt-----cttcaatcaatcaatacacgctttacttgcttattcacttttccactttcggttcgattaaaatttagaatttaaaccacccaaaaataattgtaaatataatttgaaccgtgtgcatatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAA
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gtattgtactcacacttgactcatctttttgt-ttggtatttttatggagcgtttggattgagagaaatgaaaagaaaatgctcaaaaatggtctcactttc--ttcaactatgttttcttctcatttctcttccttctctcttgctaattt--tctcatttttgtggattta-----gGAGTTACTATCGTTGCACCAGTGCATCATGTAATGTGAAGAAACGAGTGGAGAGGTGTTTCAAGGATCCGGCCATTGTCGTAACCACCTACGAAGGTCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15337380|gb|BI498036.1|BI498036EST: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactaacac ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaaccacccaaaaataattgtaaatataatttgaaccgtgtgcatatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAA
aaaaataattgtaaat TA-rich tract