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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccctttttctgccctaaggttgagtgctcgccttctgtttagtctgtctttcaactactaacaatatgttttgatatttagAGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAG

Basic information

species Glycine max
transcript GLYMA19G40480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g19510.1 (Oryza sativa), 3'ss of exon 3
gtaggccctttttctgccctaaggttgagtgctcgcct-tctgtttagtctgtctttcaactactaacaatatgtt-ttgatatttagAGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAG
        |      || |||   |   |  |  |  | | |||  ||  |    |       || ||  | |||  |||      |||| ||  | || ||||| ||| | || || ||||||||| | |||||||| ||||||||||| || || || |||||||||||||||||||||
-------gtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAG

upper sequence: GLYMA19G40480.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 3
------------gtaggccctttttctgccctaa--ggttgagtgctcgccttctgtttagtctgtctttcaactactaacaatatgttttgatatttagAGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAG
             || |    | || |||         |  |||| | ||   |   |||  |  |  | || | | |     | || |||  | || |||||||| | || ||||| |||||||| |||||||||||| | ||||||||||| || |||||||| || ||||||||  | |||||| |||||
gtaaggggctggttaagtttatcttttgctacgcttactaaagtgttggcacac-acttatgcgttaatgcatccaatttgtctctgatttc-tcttcagAGAATAATCCGATGTGGTGGAGCTGTTGATGATGATATGGCAAACATCATAGTGGCTCAGCTTCTCTATCTTGATGCTGTTGATCCTGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgccttctgtttagtctgtctttcaactactaacaatatgttttgatatttagAGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAG
                                taacaatatgttttga  TA-rich tract