1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttatcatacgtgcaatgaaccgccccattgcatatttatctatttggtactgtaggtgtgatgatcgcaaattgataatattattttattgtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAACAATGTCCATTAG
species | Glycine max |
transcript | GLYMA19G40340.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAG CAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATEST: gi|213614284|gb|DB964944.1|DB964944
genomic: AGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGgtatgaactt ... gtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAAT
EST: AGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAG CAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATEST: gi|193699496|gb|FK640301.1|FK640301
genomic: AGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGgtatgaactt ... gtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAAT
EST: ATGGTGCAACG-AAAAGGAAAATACAACCTGTGAAATATGTCTCCAG CAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATEST: gi|193703579|gb|FK640123.1|FK640123
genomic: ATGGTGCAACGAAAAAGG-AAATACAACCTGTGAAATATGTCTCCAGgtatgaactt ... gtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAAT
EST: ATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAG CAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATEST: gi|151407045|gb|EV276860.1|EV276860
genomic: ATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGgtatgaactt ... gtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAAT
EST: AGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAG CAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAAT
genomic: AGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGgtatgaactt ... gtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAAT
ggtactgtaggtgtgatgatcgcaaattgataatattattttattgtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAACAATGTCCATTAG
aattgat putative branch site (score: 4)
ttgttttt putative PPT
aaattgataatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcatacgtgcaatgaaccgccccattgcatatttatctatttggtactgtaggtgtgatgatcgcaaattgataatattattttattgtttttgcagCAATATGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAACAATGTCCATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - tacgtgc
- - - - - - - - - -ccgcccc
- - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat