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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcataatttccctttcatttagttgcatttggatagattattgaatttctctttttgagtttgggttatgatgttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCTATGGATGAAGGGATACAAGGTCATTGTTCTTGATGTGCCTTTGTTATTC

Basic information

species Glycine max
transcript GLYMA19G39680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39680.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g00040.t01 (Vitis vinifera), 3'ss of exon 2
------------gtattcataatttccctttcatttagttgcatttggatagattattgaatttctc---tttttgagtttgggttatgatgttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCTATGGATGAAGGGATACAAGGTCATTGTTCTTGATGTGCCTTTGTTATTC
            || |   |   ||    ||||||   ||  | ||| |  ||  ||  ||||       |||||    |||  ||   ||    ||||||  | || || ||||  ||||||  ||| || |||||| | ||||| || |||||||||||||| | |||||| |||||||||||||| |||||||| || 
aatcttttttgagtgtcagttgattataattcattgcctta-acttgtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408092|gb|EV277900.1|EV277900
EST:     CTTGGCCAAATTGTCTTCTCCGATCCGGATAAGCGTCAATTTCTCAACCG                         ATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCT
genomic: CTTGGCCAAATTGTCTTCTCCGATCCGGATAAGCGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCT
EST: gi|213610553|gb|DB960606.1|DB960606
EST:     CTTGGCCAAATTGTCTTCTCCGATCCGGATAAGCGTCAATTTCTCAACCG                         ATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCT
genomic: CTTGGCCAAATTGTCTTCTCCGATCCGGATAAGCGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCT
EST: gi|192333768|gb|FK025827.1|FK025827
EST:     CTTGGCCAAATTGTCATCTCCGATCCGGATAAGCGTCAATTTCTCAACCG                         ATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCT
genomic: CTTGGCCAAATTGTCTTCTCCGATCCGGATAAGCGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggatagattattgaatttctctttttgagtttgggttatgatgttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCTATGGATGAAGGGATACAAGGTCATTGTTCTTGATGTGCCTTTGTTATTC
                                              ttgtttt  CT-rich tract
     atagattattgaattt  TA-rich tract