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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtgatcgacaacactctctcttcttctgcttcttcttcttctctctctctctctctctctctctctctctctctctctctctctttatatatatatatatatatccgttgtatgcattgatgcattcatatgcacttggatcgttcatcgattttactgttcttgttcagGAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAG

Basic information

species Glycine max
transcript GLYMA19G38280.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734971|gb|BM528492.1|BM528492
EST:     AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAG
genomic: AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGgtgaggtgat ... tcttgttcagGAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAG
EST: gi|208054216|gb|GD854409.1|GD854409
EST:     AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAATTCACAACCACGGTTTCAGTTCATCGTCATG
genomic: AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGgtgaggtgat ... tcttgttcagGAATTCACAACCACGGTTTCAGTTCATCGTCATG
EST: gi|207720356|gb|GD703065.1|GD703065
EST:     AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAATTCACAACCACGGTTTCAGTTCAATCGTCATG
genomic: AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGgtgaggtgat ... tcttgttcagGAATTCACAACCACGGTTTCAGTTCA-TCGTCATG
EST: gi|19935333|gb|BQ080363.1|BQ080363
EST:     AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAG
genomic: AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGgtgaggtgat ... tcttgttcagGAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatgcattcatatgcacttggatcgttcatcgattttactgttcttgttcagGAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAG
 cattgat  putative branch site (score: 4)
                                            ttcttgttc  putative PPT
        attcatat  TA-rich tract