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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattttaatgtgtaaatttgagcttctctaatgttgatttggtcaaattttgttttaattgaatgcggactttattttctgctatatccctttgaactcggcatgatccgatttctccattttttttttctggtattaattatgatttattttctgcaaaagGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTA

Basic information

species Glycine max
transcript GLYMA19G37830.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37830.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G36310.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaactattttaatgtgtaaatttgagcttctctaatgttgatttggtcaaattttgttttaattgaatgcggactttattttctgctatatccctttgaactcggcatgatccgatttctccattttttttttctggtattaattatgatttattttctgcaaaagGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTA
              ||   |  ||   || |||| ||   ||||     ||| |||  |||| |   |||  || |||    || | | | | |  |   ||     |  | || |    |      |||   |    |  |   | || | | ||   |     |||||||||  || ||||||||||||||||| ||||||||| | ||||||||  |    |  || || || || |   |  |||||  |||||| |||||  
--------------gtaccatctttctctcctctcataaggattg----aaactttagttta-tgccatgaagatttt----tcagatctttgctatgagaca----aaaagccaaaccgttgtgactttagcttgaattctggctttggtgtgttgattc----agGGTGGAATTCCGCGTGTTGCTGATTTTGTGCATGGTAAAAACGGACTAGGAGATGTCTCTCTTCCTCCTCCGAGTAGAAAGAAATCTGAGAAAAGTGCAG

upper sequence: GLYMA19G37830.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g03690.t01 (Vitis vinifera), 3'ss of exon 3
gtaactattttaatgtgtaaatttgagcttctctaatgttgatttggtcaaattttgttttaattgaatgcggactttattttctgctatatccctttgaactcggcatgatccgatttctccattttttttttctggtattaattatgatttattttctgcaaaagGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTA
                                                          |  |  |||||    | | |  ||  |||  | ||   |   ||      || | |   ||     ||||   || |||       | |  ||   | |  || |  |||| |||  ||||||||||||||| ||| ||||||||   |||||||| || |||| |||  |||||| ||| |||| | ||||||| ||||||| |||  
----------------------------------------------------------tccacatgaatc---attgtccttgttgccttgtcaactgacaccacttttggttcaggttt----ttttgacttactgcagcc--taactatccttgtgttggatcagGGGGGAGAGCCTCGTGTTGCTGACTTTATTCATGGTTCTGATGGACTGGGAAACATATTTTTACCCCAACCAAAAGCTAAGAAAATCGAGAAGAATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatttctccattttttttttctggtattaattatgatttattttctgcaaaagGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTA
                          tattaat  putative branch site (score: 2)
                                      tttattttct  putative PPT
           attttttttttctggt  TA-rich tract