1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaagtttattgaatttcacagaaaaccatcaatactcggttgaataacatgttataaagtgccgaattatacggaccatgacatgttattggggacacaattgaaattgggattttgatgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAG
species | Glycine max |
transcript | GLYMA19G37700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCGGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAG GAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAEST: gi|192315918|gb|FK008815.1|FK008815
genomic: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAGgtgaagttta ... tgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAA
EST: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAG GAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAEST: gi|27809244|gb|CB063666.1|CB063666
genomic: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAGgtgaagttta ... tgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAA
EST: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAG GAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAEST: gi|14125837|gb|BG790275.1|BG790275
genomic: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAGgtgaagttta ... tgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAA
EST: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAG GAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAEST: gi|151405325|gb|EV275139.1|EV275139
genomic: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAGgtgaagttta ... tgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAA
EST: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAG GAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAA
genomic: ATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACTTGCCAGAAGAAGgtgaagttta ... tgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAA
gaccatgacatgttattggggacacaattgaaattgggattttgatgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAG
ttttgat putative branch site (score: 4)
aattgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtttattgaatttcacagaaaaccatcaatactcggttgaataacatgttataaagtgccgaattatacggaccatgacatgttattggggacacaattgaaattgggattttgatgcatttcagGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC