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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattagcactaaataaatgttccatgtgattacgaattttggatatcattctgagtcatttttttggtgactgaatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA

Basic information

species Glycine max
transcript GLYMA19G37480.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37480.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 2
gttaattagca-ctaaataaatgttccatgtgattacgaattttggatatcattctgagtcatttttttggtgactgaatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA
        | | | | || ||  |  ||    ||| |||  |  || | || |    |   |||       ||  |||| | |||||||||| |||||| |||| ||||| || |||||||||||||||||  | ||||| ||||| ||| | ||  |||| || ||||||||||||||||| |||||||
--------gtatccacatcaaattctcaaaacattccgatctgggggtgtcct----aacaatt-------tggatgaa-aaaaatgcagGACTTGGTGGAGCTAGAATGTCAGAGATGGGCAAGCAAAGGCATAAACATCAAGTACGAGATAAGAAACAACAGAAATGGGTACAAAGCAGGAGCTCTCA

upper sequence: GLYMA19G37480.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 2
gttaattagcactaaataaatgttccatgtgattacgaattttggatatcattctgagtcatttttttggtgactgaatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA
                    | | ||  | | || |   | ||||| |  ||   ||   || |  ||||    |  | ||    |||| |  ||||| |||| || ||||| |||||||| ||||||||||||||||| ||||||||| |  ||||||| |||||||| ||||| || ||||| ||||
-------------------gtttgcctagagcttccacctcttgga-actatgtggatggatgtgattggatgttttacac----gcagAATCTGGTGGAGCTCGAGTGCCAGAGATGGGCGAGCAAAGGGGTGAACATCAAGTATGAGATCCGGGACAACAGGAATGGCTACAAGGCGGGGGCGCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgaattttggatatcattctgagtcatttttttggtgactgaatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA
                        tcattttttt  TA-rich tract