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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA

Basic information

species Glycine max
transcript GLYMA19G37370.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 3
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                           ||| || |||||        ||    ||||   |||   || | ||   || | || ||   |   ||| |  ||    || || |||                  | | ||||||| ||||| ||||||||||||||||| ||| | || |||||||| |||||||||||| ||||||| |||||||| || |||||||| ||||| ||||| |
-------------------------------------------gtcaggctgttc--------atcgaatgattgctttaatgtcaggatatttctctgctta--gaaggttgttgtaaacgtattggtat------------------attgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g59990.2 (Oryza sativa), 3'ss of exon 3
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttg-ttgctagttatgatattgatactgatatgaggatttttgtttgttgaat-ctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                                    || | | | |||      ||| | ||    ||    |   |  ||| | ||  |   ||  |      | |||    ||||   | || |||||||| |||||||| ||||| ||||| ||| | || |||||||| |||||||||||| | ||||| |||||||| || |||||||| ||||| ||||| |
--------------------------------------------------------------------gtaaccctctttgtccattgaagtttgaaagtccaatctatgattaagttagggggtcttttgcatacaatttcaagtgttctcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g12250.1 (Oryza sativa), 3'ss of exon 3
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatcta-cagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                                    ||||  | |||   |  | || || |     | |||    ||     |   | |      | |||  | |||  || ||  | | || ||||| ||||||||| ||||||| || || ||| | || |||||||| || ||||||||  | ||||| || ||||| || |||||||||||||| ||||| |
--------------------------------------------------------------------gtgagtacttt---ggcaagatggatacacatgtgt----aggacaaaagctaacctatttctgatcaatttctttggtaaactatatcagGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCACAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G110328_T04 (Zea mays), 3'ss of exon 3
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                                            ||  ||| ||| |   |||| |    | ||      || |||   ||  |  ||||   |      |   |    | || |||||||||| ||||| ||||||||||| ||| | || |||||||| |||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |
---------------------------------------------------------------------------gttactagctatcatatttttgtaagagatgtctaagattataa-aatcttcttatggaaagaaac-tacatatgttttatagGTTTTCCTTTTTGCCAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                          || |  || ||| | |||||||| || ||  |     |||||  | |  ||  |||   || |||  |      ||||  |   | ||||   | |  |||||||||| ||||| ||||| ||||| ||| | || |||||||| |||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |
---------------------------------------------------------gttact-tgctgtta-catttttt-gtaatagg-----tttgtaagct-tta--tatagcat-gatcttatggcaaggaaatacatctgtt---tttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 2
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                                | |   | |  ||   |  |||| || | ||| |    | |  |||  |  || ||  |  ||  |  || | ||   ||||||    ||| |||| ||||| ||||| ||||| ||||| ||| | || |||||||| |||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |
---------------------------------------------------------------gttactcgct-gttacatttttataagagatttataa--gcttatag--aaaatgtttgttatggaa--agaacttacatttgtt----ctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                        ||| |   |  | |||  || ||    | || |   |  ||||||| |   | |  |   | ||| |  |  | |    ||    ||||||    | | ||||||||| |||||   |||||||||||||||||||| ||||| ||     ||||||| || |||||  | |||||||| |||||||||||||||||||| |
--------------------------------------------------------gttggttcttttatga--atcttcagctaatcaaattgatttgtttatactttgcaaatgttttggttttagtcttttaatg---gtttgtattgttttcagGTTTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36620.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctaca---gGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                                                ||  ||   ||||     |||||  |  |  ||  | |  || || ||   | ||||| ||  |||| |||   || ||||   |  || |||| || ||     |  |   ||| ||  |||||   ||||| |||||||||||||||||||||||     ||||||| || |||||   ||||||||| |||||| ||||||| ||||| |
------------------------------------------------gtactttattttggttaaatgtgtgctctacttgttaagaagagtctt--atctgttgtta-ctatg-tatctgtattgattaaatcatctttggtttttatggttgtattagGTGTTTTTGTTTCTCAACTCCAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCATCTAAGCTTTGCTGGACTGCTATGTACCGAAAGCAGCACAAGA

upper sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 2
------------gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcatttt---ttagttatgagg--gttttttgtttgtt-----gctagttatgatattgat----actgatatgaggat--ttttgt--ttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
             |   || | |||| ||   |  | || ||    |||   |  |  || |||  || |    ||  || | ||    ||   ||| |||    |  || ||  | |||||     |||  ||||  | |  ||    | | ||||    ||  | | ||  ||| | |||    |||| || || ||||| || |||||||| ||||| || || ||||| || || |||||||||||||| |||||||| || ||||| ||||||||||| || |
gtaaaaatgtggatttaattacatattttcaagtctcatatga-atatttaatttgcttgattgc-ctatcaaaaaatatttaatttccttgatttatttagagagcagtgttggggttgttattgtgctttttatattctgaatgtccattaatatttatataatctcgtaattgatcaattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTTAAGCCTTCAAAGCTTACCTGGACGGCTATGTATAGAAAGCAACATAAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696048|gb|FK637516.1|FK637516
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193444493|gb|FK409805.1|FK409805
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|208275363|gb|GE077731.1|GE077731
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193645919|gb|FK588332.1|FK588332
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|151401739|gb|EV271552.1|EV271552
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|12774578|gb|BG239505.1|BG239505
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193693745|gb|FK631227.1|FK631227
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|207796665|gb|GD768391.1|GD768391
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCGG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|16519552|gb|BI347337.1|BI347337
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|207838568|gb|GD812428.1|GD812428
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|4294611|gb|AI442215.1|AI442215
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193724048|gb|FK656370.1|FK656370
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193600891|gb|FK551646.1|FK551646
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193530435|gb|FK486634.1|FK486634
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193474772|gb|FK442841.1|FK442841
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193482641|gb|FK443988.1|FK443988
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|208108815|gb|GD907191.1|GD907191
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193597139|gb|FK554005.1|FK554005
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|193461160|gb|FK426767.1|FK426767
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|207758191|gb|GD726361.1|GD726361
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|207701247|gb|GD683794.1|GD683794
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAAT
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAAT
EST: gi|208246935|gb|GE049419.1|GE049419
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
EST: gi|208296129|gb|GE092267.1|GE092267
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAAATGTAAGAGGTATTTCCACAATCGCCT
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAA-TGTAAGAGGTATTTCCACAATCGCCT
EST: gi|193707431|gb|FK645855.1|FK645855
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTC
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTC
EST: gi|208255541|gb|GE055224.1|GE055224
EST:     CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG
genomic: CCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGgtaacataaa ... gaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA
                   tactgat  putative branch site (score: 2)
       ttatgatattgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA