Sequence
atgc intronic sequence ATGC exonic sequencegtatatactcttcttggggttaatcttggttttcttttttcagGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGC
Basic information
species | Glycine max |
transcript | GLYMA19G37260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G37260.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36670.2 (Arabidopsis thaliana), 3'ss of exon 1
------------------------------------------------------gtatatactcttct-tggggttaatcttggttttctttttt--cagGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGC
||| | ||||| | || | | || |||| ||| || ||| | ||||| || || || || || || || ||| | | |||||| | ||||||||||||||||||||||||||||||||| | | ||| | |||||
tatgtatgtcacatttgcacacacactctgttattggagttctaatggaatttattatcttctcttttgtgatatgtagctgtattttgtttcttggtagGCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACAGAGTTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC
upper sequence: GLYMA19G37260.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36670.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------gtatatactcttct-tggggttaatcttggttttctttttt--cagGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGC
||| | ||||| | || | | || |||| ||| || ||| | ||||| || || || || || || || ||| | | |||||| | ||||||||||||||||||||||||||||||||| | | ||| | |||||
gtatgtcacatttgcacacacactctgttattggagttctaatggaatttattatcttctcttttgtgatatgtagctgtattttgtttcttggtagGCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACAGAGTTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatatactcttcttggggttaatcttggttttcttttttcagGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGC
ggttaat putative branch site (score: 4)
tcttggttttcttttt CT-rich tract
ttttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatactcttcttggggttaatcttggttttcttttttcagGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG