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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtttttatcgcttttcatgattttagttgtatctgattttgtaaatggaaaatagttaggaaggttgccgttaatcgtagaattagtactttctagttactctgatgttgtgaactgttcctattttcaaatatgctgatcttaattaatttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT

Basic information

species Glycine max
transcript GLYMA19G37230.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37230.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53120.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtgtttttatcgcttttcatgattttagttgtatctgattttgtaaatggaaaatagttaggaaggttgccgttaatcgtagaattagtactttctagttactctgatgttgtgaactgttcctattttcaaatatgctgatcttaattaatttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT
                                                                            ||  || |    || ||  ||  | ||||  ||  | |   ||        | ||||   || |  |  | || | || | | |   || ||       || || || |||||  |  |||||||| | |||||||||||||||||||| || ||| |||  || ||||| ||||||||  | || | ||||
--------------------------------------------------------------------------gtttgctctttttgtttgt--ttgtttgttatcct--tctctcgagtgtgcgttttttttgtatgtcttctttttgaatagtgtat--acttttc------tgtagCGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAAT

upper sequence: GLYMA19G37230.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36680.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtgtttttatcgcttttcatgattttagttgtatctgattttgtaaatggaaaatagttaggaaggttgccgttaatcgtagaattagtacttt-ctagttactctgatgttgtgaactgttcctattttcaaatatgc-tgatcttaattaatttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT
                                                                        |   |  |  |   | | | | || | || ||   | || | |  || |   || || || | |   ||   |||| ||  | || | || |||||||          ||||| |||||| |  |||||||| | |||||||| |||||||||||||||||| |||| || ||||| |||||||  |||||||  |||
------------------------------------------------------------------------gatatataaagggaattgatttctgtacttgtcggtatgttatcttgtatgcttactcttattactcatttatgatgttcttcaaatgttttgctctt----------agTGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454511|gb|AW185194.1|AW185194
EST:     GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgtgttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|151403740|gb|EV273550.1|EV273550
EST:     GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgtgttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|151404632|gb|EV274446.1|EV274446
EST:     GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgtgttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|13563506|gb|BG551726.1|BG551726
EST:     GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgtgttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|21888222|gb|BQ741444.1|BQ741444
EST:     GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgtgttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctattttcaaatatgctgatcttaattaatttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT
                        aattaat  putative branch site (score: 3)
                              tttttctgctctttat  CT-rich tract
                      ttaattaatttttctg  TA-rich tract