1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgattcatctattcattttttatatataaataagataagaagagtggttgatgctctttggagctgaatagcagattattttctttctttactgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
species | Glycine max |
transcript | GLYMA19G35710.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|193466642|gb|FK432077.1|FK432077
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|208158107|gb|GD957832.1|GD957832
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|208201125|gb|GD999576.1|GD999576
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTCCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|22523592|gb|BU082403.1|BU082403
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: AGACTGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|22540225|gb|BU090068.1|BU090068
genomic: AGACTGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|208098884|gb|GD892687.1|GD892687
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|208305097|gb|GE102798.1|GE102798
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: AGACTGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|193480869|gb|FK444308.1|FK444308
genomic: AGACTGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|208294947|gb|GE089502.1|GE089502
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCC- AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|298189455|gb|HO037858.1|HO037858
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|208126482|gb|GD924788.1|GD924788
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: ACGAGCTT-CCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|8669991|gb|BE191098.1|BE191098
genomic: ACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|17964359|gb|BM271095.1|BM271095
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTEST: gi|298182727|gb|HO031462.1|HO031462
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: TGAAGACGAGCTTCCCCTTGCGCCG AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
ggttgatgctctttggagctgaatagcagattattttctttctttactgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
ggttgat putative branch site (score: 5)
ttattttctttcttta putative PPT
attattttctttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattcatctattcattttttatatataaataagataagaagagtggttgatgctctttggagctgaatagcagattattttctttctttactgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA