Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattcatctattcattttttatatataaataagataagaagagtggttgatgctctttggagctgaatagcagattattttctttctttactgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT

Basic information

species Glycine max
transcript GLYMA19G35710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301012|gb|FG990112.1|FG990112
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|10844730|gb|BF067948.1|BF067948
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|193466642|gb|FK432077.1|FK432077
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|208158107|gb|GD957832.1|GD957832
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|208201125|gb|GD999576.1|GD999576
EST:     TGAAGACGAGCTCCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|22523592|gb|BU082403.1|BU082403
EST:     AGACTGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: AGACTGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|254335060|gb|GR844845.1|GR844845
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|208098884|gb|GD892687.1|GD892687
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|208305097|gb|GE102798.1|GE102798
EST:     AGACTGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: AGACTGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|193480869|gb|FK444308.1|FK444308
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|208294947|gb|GE089502.1|GE089502
EST:     TGAAGACGAGCTTCCCCTTGCGCC-                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|151398751|gb|EV268622.1|EV268622
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|298189455|gb|HO037858.1|HO037858
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|208126482|gb|GD924788.1|GD924788
EST:     ACGAGCTT-CCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: ACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|8669991|gb|BE191098.1|BE191098
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|17964359|gb|BM271095.1|BM271095
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|120533838|gb|EH261971.1|EH261971
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
EST: gi|298182727|gb|HO031462.1|HO031462
EST:     TGAAGACGAGCTTCCCCTTGCGCCG                         AAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
genomic: TGAAGACGAGCTTCCCCTTGCGCCGgtgagtttct ... actgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgatgctctttggagctgaatagcagattattttctttctttactgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT
 ggttgat  putative branch site (score: 5)
                              ttattttctttcttta  putative PPT
                             attattttctttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgattcatctattcattttttatatataaataagataagaagagtggttgatgctctttggagctgaatagcagattattttctttctttactgtttcagAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - ctattca
- - - - - - - - - - - - -ataaataa
- - - - - - - - - - - - - - - - -gataagaa
- - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagctg