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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctggtgtatcagattataacaatttataatctgtatatcttcaaatggcaaaccttatgtatctgaaattaatcctagtttttggtgtgtgatcacagAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAG

Basic information

species Glycine max
transcript GLYMA19G35290.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318495|gb|GR832663.1|GR832663
EST:     CTCTCTCTGTG                         AGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTT
genomic: CTCTCTCTCTGgtttgtttct ... gtgatcacagAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTT
EST: gi|26059460|gb|CA802374.1|CA802374
EST:     CTCTCTCTGTG                         AGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTT
genomic: CTCTCTCTCTGgtttgtttct ... gtgatcacagAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTT
EST: gi|254318496|gb|GR832664.1|GR832664
EST:     CTCTCTCTGTG                         AGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTT
genomic: CTCTCTCTCTGgtttgtttct ... gtgatcacagAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggcaaaccttatgtatctgaaattaatcctagtttttggtgtgtgatcacagAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAG
                       aattaat  putative branch site (score: 3)
                tatctgaaattaat  TA-rich tract