1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttcgtttcttcttcttcttcttcttcttattcttttccgtaggctgttttattgcgcgtgtttttttttttggttcacgaaagtgattcaaaatttggataatttgtgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAGGCAACGTATGCTCAAACAG
species | Glycine max |
transcript | GLYMA19G35010.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|193369053|gb|FK338471.1|FK338471
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|213617091|gb|DB961571.1|DB961571
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|209704697|gb|BW656675.1|BW656675
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|192295523|gb|FG988097.1|FG988097
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|254319887|gb|GR830911.1|GR830911
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|208211739|gb|GE009958.1|GE009958
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAEST: gi|7685076|gb|AW755724.1|AW755724
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
EST: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAA TTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
genomic: AGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAAgttcgtttct ... tgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAA
ttttttttttggttcacgaaagtgattcaaaatttggataatttgtgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAGGCAACGTATGCTCAAACAG
aaaatttggataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtttcttcttcttcttcttcttcttattcttttccgtaggctgttttattgcgcgtgtttttttttttggttcacgaaagtgattcaaaatttggataatttgtgtttggcagTTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAGGCAACGTATGCTCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT