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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG

Basic information

species Glycine max
transcript GLYMA19G33650.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171406|gb|HO016438.1|HO016438
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCCTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|9819421|gb|BE554934.1|BE554934
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|193396325|gb|FK363199.1|FK363199
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTACCAATTACACCCAGTTAA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATT-CCAATTACACCCAGTTAA
EST: gi|13477752|gb|BG507504.1|BG507504
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298166996|gb|HO010435.1|HO010435
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|15663056|gb|BI700427.1|BI700427
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|9820763|gb|BE556273.1|BE556273
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|208042686|gb|GD841798.1|GD841798
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|208167184|gb|GD963030.1|GD963030
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|19453002|gb|BM954412.1|BM954412
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298187303|gb|HO034452.1|HO034452
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298197094|gb|HO041837.1|HO041837
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298173934|gb|HO017270.1|HO017270
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298168059|gb|HO013322.1|HO013322
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298194861|gb|HO043333.1|HO043333
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298192806|gb|HO033240.1|HO033240
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298184031|gb|HO029244.1|HO029244
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|151397536|gb|EV267409.1|EV267409
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|192319134|gb|FK009102.1|FK009102
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298166854|gb|HO010293.1|HO010293
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298166545|gb|HO009984.1|HO009984
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298195273|gb|HO043801.1|HO043801
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298183535|gb|HO028748.1|HO028748
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG
                            gattaac  putative branch site (score: 2)
                             attaacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT