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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattattttcacttcacttgattactgtgaatttatcctgtcttgtaactttcttattaatttttaatatttcgcacatggttgcattgtgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCATCCTGCCATCATGATCTTGGGAATATAAGGTGTTTAGCTT

Basic information

species Glycine max
transcript GLYMA19G33170.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424928|gb|CA936448.1|CA936448
EST:     TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: gi|192314659|gb|FK005941.1|FK005941
EST:     TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: gi|192314658|gb|FK005940.1|FK005940
EST:     TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: gi|192317975|gb|FK009455.1|FK009455
EST:     TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: gi|15813020|gb|BI785295.1|BI785295
EST:     TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaactttcttattaatttttaatatttcgcacatggttgcattgtgtgtttcagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCATCCTGCCATCATGATCTTGGGAATATAAGGTGTTTAGCTT
     tttcttattaattttt  TA-rich tract