1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggggggggggggtgttggcatttaggatctgttacaatgtaaaattattcttaattcttaattaataaaatgttaatgttgttgggtttgtgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGGGGCGTCCACGTCACACTGGGGTGATGGTTGGGATGGGGCAGAAGGATG
species | Glycine max |
transcript | GLYMA19G32990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGEST: gi|41146304|gb|CK606515.1|CK606515
genomic: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
EST: CGAGGATATTCAACCCCTCGTTTGCGATAAT-GAACCGGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGEST: gi|192329006|gb|FK019705.1|FK019705
genomic: CGAGGATATTCAACCCCTCGTTTGCGATAATGGAACC-GGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
EST: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCCGTGTTCCCTAGCATTGTGEST: gi|193312823|gb|FK282320.1|FK282320
genomic: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
EST: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGEST: gi|193421389|gb|FK389590.1|FK389590
genomic: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
EST: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGEST: gi|193663559|gb|FK604585.1|FK604585
genomic: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
EST: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGEST: gi|193310736|gb|FK274632.1|FK274632
genomic: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
EST: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG GCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
genomic: CCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGgtatcaattt ... tgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTG
tattcttaattcttaattaataaaatgttaatgttgttgggtttgtgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGGGGCGTCCACGTCACACTGGGGTGATGGTTGGGATGGGGCAGAAGGATG
tgttaat putative branch site (score: 3)
ttaattcttaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggggggggggtgttggcatttaggatctgttacaatgtaaaattattcttaattcttaattaataaaatgttaatgttgttgggtttgtgtgatatagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGGGGCGTCCACGTCACACTGGGGTGATGGTTGGGATGGGGCAGAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG