Sequence
atgc intronic sequence ATGC exonic sequence...ggttgtgtcatgagtggcgtaatcaaacaagttttaactttttaaatctcttggcttgtccttttatataatttttttgcaatatttgtatttactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAACACTCCCTTTTCTATCTCCACATTCTGCTGTTGTGGCATTCTGTGAGGG
Basic information
species | Glycine max |
transcript | GLYMA19G32670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32670.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G331374_T01 (Zea mays), 3'ss of exon 1
ggttgtgtcatgagtggcgtaatcaaacaagttttaac--tttttaaatct-cttggcttgtccttttatataatttttttg--caatatttgtatt--tactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAACACTCCCTTTTCTATCTCCACATTCTGCTGTTGTGGCATTCTGTGAGGG
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-------ttaaaaatcatgtagcaggctatttgttaaaggtatctggttttgtttcacaagctcccttctgcattcttctcaaatggtttcttcactgatgtcacagGTGGAGTACATGCTGCGATGGTGGGATCCCTGCATCCTACTCCAGTTGCCACACTGCCATTTCTCGCTCCACACTCTGCTGTGGTACCTTTCTGTGAAGG
upper sequence: GLYMA19G32670.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g07700.t01 (Vitis vinifera), 3'ss of exon 3
----ggttgtgtca-tgagtggcgtaatcaaacaagttttaactttttaaatctcttggcttgtccttttatataatttttttgcaatatttgtatttactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAACACTCCCTTTTCTATCTCCACATTCTGCTGTTGTGGCATTCTGTGAGGG
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aaacaaacatgttggttcctgttgtaatatacca--ttctgggaatagacatcagaactttgatcctcttct-catttgcattgatgcttttatggtaatt--agGTGGAGTACATGCTGCAATGGTTGGATCTCTGCACCCCACCCCTGTTGCTACCCTTCCTTTTCTCTCTCCACACTCTGCTGTTGTGGCATTCTGTGAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258805|gb|BE346952.1|BE346952EST: CTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAG GAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAA
genomic: CTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAGgtcagggtca ... tttactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctcttggcttgtccttttatataatttttttgcaatatttgtatttactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAACACTCCCTTTTCTATCTCCACATTCTGCTGTTGTGGCATTCTGTGAGGG
tttactcc CT-rich tract
ttttatataatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttgtgtcatgagtggcgtaatcaaacaagttttaactttttaaatctcttggcttgtccttttatataatttttttgcaatatttgtatttactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAACACTCCCTTTTCTATCTCCACATTCTGCTGTTGTGGCATTCTGTGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT