Sequence
atgc intronic sequence ATGC exonic sequence...caaccttttatatctcctgaatatgccatcatggtcttttcactagaatatattttaggtgttgacacttgtaattgattagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
Basic information
species | Glycine max |
transcript | GLYMA19G32480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 2
caaccttttatatctcctgaatatgccatcatggtcttttcactagaatatattttaggtgttga----cacttgtaattgattagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
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----------------------------gtaggatcttgtttcca-aattttttccatggattaagtgccatttgtc-tcaattgagctgttatgtgatgtcagGAAGCCAAGGAGAAATTTCAGCAGCTTCAGAAGGTGATATCTATTCTTGGGGATGAGGAGAAAAGGGCATTATATGATGAGACTGGAATTGCTGATGATG
upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 2
caaccttttatatctcctgaatatgccatcatggtcttttcactagaatatatt---ttaggtgttgacacttgtaattgattagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
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gtttaactgaggggttttggtttctttacttttcttagtttttaggggtctattcaattttacattgtaaccgg-aattcttgtttttcttat-ccaatacagGATGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATTTCGATTCTCGGTGATGAAGAGAAAAGAGCAGTCTATGATCAAACTGGCTCAGTTGATGATG
upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G06910.1 (Arabidopsis thaliana), 3'ss of exon 2
caaccttttatatctcctgaatatgccatcatggtcttttcactagaatatattttaggtgttgacacttgtaattgattagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
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---------------gttaaata------cacactcttttacttgagatattttttggattcatttacatgaa---gattctactattgttttgttacagGAAGCTAAAGACAAGTTCCAGCAGCTGCAAAAAGTGATATCAATTCTTGGTGATGAAGAGAAAAGGGCAGTCTATGATCAAACTGGCTCAATTGATGATG
upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 2
caaccttttatatctcctgaatatgccatcatggtcttttcactagaatatattttaggtgttgacacttg-taattga--ttagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
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---gtgcatttgatttctaatgatgccaaaatcctattctccatata-tccgttgcaagggtggttttctggttgttaccctttgtttttttccctcatgtagGAAGCCAAGGAAAAATTTCAGCAACTACAAAAGGTGATATCAATTCTTGGTGATGAAGAGAAAAGGGCACTCTATGATCAGACTGGTTGTGTTGATGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208042947|gb|GD842745.1|GD842745EST: ACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAG GAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCG
genomic: ACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttc ... gttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatatattttaggtgttgacacttgtaattgattagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
taattgattagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caaccttttatatctcctgaatatgccatcatggtcttttcactagaatatattttaggtgttgacacttgtaattgattagtttcttgtgttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
caacctt
- - - - - - -ctcctga
- - - - - - - - - - - -tgccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgt