1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtctgactgagttaatattgatattttctttgtacatgaactgaagctacaaagatagatccaatttacaatctcagaggaatttgtgttctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTCACAGGTGT
species | Glycine max |
transcript | GLYMA19G30550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGACGATGAGGATGATGACCATGACGAAG GACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAEST: gi|193418232|gb|FK383478.1|FK383478
genomic: GATGACGATGAGGATGATGACCATGACGAAGgtaagttggt ... tctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGA
EST: GATGACGATGAGGATGATGACCATGACGAAG GACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAEST: gi|298183956|gb|HO029169.1|HO029169
genomic: GATGACGATGAGGATGATGACCATGACGAAGgtaagttggt ... tctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGA
EST: GGATGATGACCATGACGAAG GACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAEST: gi|298198778|gb|HO042141.1|HO042141
genomic: GGATGATGACCATGACGAAGgtaagttggt ... tctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGA
EST: GATGATGACGATGAGGATGATGACCATGACGAAG GACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAEST: gi|31475951|gb|CD417979.1|CD417979
genomic: GATGATGACGATGAGGATGATGACCATGACGAAGgtaagttggt ... tctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGA
EST: CCATGACGAAG GACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGA
genomic: CCATGACGAAGgtaagttggt ... tctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGA
agctacaaagatagatccaatttacaatctcagaggaatttgtgttctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTCACAGGTGT
ttctatt CT-rich tract
aatttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctgactgagttaatattgatattttctttgtacatgaactgaagctacaaagatagatccaatttacaatctcagaggaatttgtgttctattgcagGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTCACAGGTGT
- -ctgactg
- - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - -agctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgt